Recent Scientific Publications

As of October 21, 2024

Aguilar-Camacho, J. M., Harry, N. D., &Zakas, C.(2024). Comparative Hox genes expression within the dimorphic annelidStreblospio benedictireveals patterning variation during development.EvoDevo,15, 12.*Whitman Fellow*MBL not listed as affiliation, Whitman program mentioned in acknowledgements

Allard, C. A. H.,Herbert, A. L., Krueger, S. P., Liang, Q., Walsh, B. L., Rhyne, A. L., Gourlay, A. N., Seminara, A., Baldwin, M. W., Kingsley, D. M., & Bellono, N. W. (2024). Evolution of novel sensory organs in fish with legs.Current Biology,34(19), 4349-4356.e7.*Whitman Fellow*reviewed preprint to see Whitman in acknowledgements, MBL not listed as affiliation

Garcia Arredondo, M., Kew, W., Chu, R., Jones, M. E., Boiteau, R. M.,Cardon, Z. G., & Keiluweit, M. (2024). Differential Exudation Creates Biogeochemically Distinct Microenvironments during Rhizosphere Evolution.Environmental Science & Technology.

Jokura, K.,Anttonen, T.,Rodriguez-Santiago, M., &Arenas, O. M.(2024). Rapid physiological integration of fused ctenophores.Current Biology,34(19), R889–R890.

Machmuller, M. B., Lynch, L. M., Mosier, S. L.,Shaver, G. R., Calderon, F., Gough, L., Haddix, M. L., McLaren, J. R., Paul, E. A., Weintraub, M. N., Cotrufo, M. F., & Wallenstein, M. D. (2024). Arctic soil carbon trajectories shaped by plant–microbe interactions.Nature Climate Change.

Chung, C. S., Kou, Y., Shemtov, S. J., Verheijen, B. M., Flores, I., Love, K., Del Dosso, A., Thorwald, M. A., Liu, Y., Hicks, D., Sun, Y., Toney, R. G., Carrillo, L., Nguyen, M. M., Biao, H., Jin, Y., Jauregui, A. M.,Quiroz, J. D., Head, E., Moore, D. L., Simpson, S., Thomas, K. W., Coba, M. P., Li, Z., Benayoun, B. A.,Rosenthal, J. J. C., Kennedy, S. R., Quadrato, G., Gout, J.-F., & Vermulst, M. (2024). Transcript errors generate amyloid-like proteins in huwman cells.Nature Communications,15, 8676.

Zakon, H. H.(2024). Evolution: Sea robins get a leg up.Current Biology,34(19), R898–R901.

Zhang, Y., McCarthy, L.,Ruff, S. E., & Elhaik, E. (2024). Microbiome Geographic Population Structure (mGPS) Detects Fine-Scale Geography.Genome Biology and Evolution, evae209.

Agrawal, A., Pathak, A., Ngwa, D. N., Thirumalai, A.,Armstrong, P. B., & Singh, S. K. (2024). An evolutionarily conserved function of C-reactive protein is to prevent the formation of amyloid fibrils.Frontiers in Immunology,15.

Herbert, A. L., Allard, C. A. H., McCoy, M. J., Wucherpfennig, J. I., Krueger, S. P., Chen, H. I., Gourlay, A. N., Jackson, K. D.,Abbo, L. A.,Bennett, S. H., Sears, J. D., Rhyne, A. L., Bellono, N. W., & Kingsley, D. M. (2024). Ancient developmental genes underlie evolutionary novelties in walking fish.Current Biology.

Ruff, S. E., Schwab, L.,Vidal, E., Hemingway, J., Kraft, B., & Murali, R. (2024). Widespread occurrence of dissolved oxygen anomalies, aerobic microbes, and oxygen-producing metabolic pathways in apparently anoxic environments.FEMS Microbiology Ecology, fiae132.

Child, T.,Costello, J. H., Gemmell, B. J., Sutherland, K. R., &Colin, S. P.(2024). High prey capture efficiencies of oceanic epipelagic lobate and cestid ctenophores.Journal of Plankton Research, fbae044.

Eren, A. M., & Banfield, J. F. (2024). Modern microbiology: Embracing complexity through integration across scales.Cell,187(19), 5151–5170.

Attenborough, T.,Rawlinson, K., Diaz Soria, C., Ambridge, K., Sankaranarayanan, G., Graham, J., Cotton, J., Doyle, S., Rinaldi, G., & Berriman, M. (2024). A single-cell atlas of the miracidium larva ofSchistosoma mansonireveals cell types, developmental pathways, and tissue architecture.eLife,13.

Eren, A. M., & Delmont, T. O. (2024). From marine microbial genomes to improve biotechnology.Nature.

Jessop, A.-L., Pirih, P., Wang, L.,Patel, N. H., Clode, P. L., Schröder-Turk, G. E., & Wilts, B. D. (2024). Elucidating nanostructural organization and photonic properties of butterfly wing scales using hyperspectral microscopy.Journal of The Royal Society Interface,21(218), 20240185.

Opher, M., Loeb, A., Zucker, C., Goodman, A., Konietzka, R.,Worden, A. Z., Economo, E. P., Miller, J. A., Alves, J., Grone, J., Kornbleuth, M., Peek, J. E. G., & Foley, M. M. (2024). The Passage of the Solar System through the Edge of the Local Bubble.The Astrophysical Journal, 972(2).

Arias-Ortiz, A., Wolfe, J., Bridgham, S. D., Knox, S., McNicol, G., Needelman, B. A., Shahan, J., Stuart-Haëntjens, E. J., Windham-Myers, L., Oikawa, P. Y., Baldocchi, D. D., Caplan, J. S., Capooci, M., Czapla, K. M., Derby, R. K., Diefenderfer, H. L.,Forbrich, I., Groseclose, G., Keller, J. K., Kelley, C., Keshta, A. E., Kleiner, H. S., Krauss, K. W., Lane, R. R., Mack, S., Moseman-Valtierra, S., Mozdzer, T. J., Mueller, P., Neubauer, S. C., Noyce, G., Schafer, K. V. R., Sanders-DeMott, R.,Schutte, C. A., Vargas, R., Weston, N. B., Wilson, B., Megonigal, J. P., & Holmquist, J. R. (2024). Methane fluxes in tidal marshes of the conterminous United States.Global Change Biology,30(9), e17462.

Beca-Carretero, P., Meister, M.,Teichberg, M.,Moreira-Saporiti, A., Schneekloth, F., & Reuter, H. (2024). Methodological Insights into Implementing cellular automata models for simulating seagrass dynamics: Responses to global change effects.MethodsX,13, 102936.

Johnson, C., Guo, M., Schneider, M. C., Su, Y., Khuon, S., Reiser, N., Wu, Y.,Riviere, P. L., &Shroff, H.(2024). Phase-diversity-based wavefront sensing for fluorescence microscopy.Optica,11(6), 806–820.

Klementz, B. C., Brenneis, G., Hinne, I. A., Laumer, E. M., Neu, S. M., Hareid, G. M., Gainett, G., Setton, E. V. W., Simian, C., Vrech, D. E., Joyce, I., Barnett, A. A.,Patel, N. H., Harvey, M. S., Peretti, A. V., Gulia-Nuss, M., & Sharma, P. P. (2024). A novel expression domain ofextradenticleunderlies the evolutionary developmental origin of the chelicerate patella.Molecular Biology and Evolution, msae188.

Schiebel, R., Aardema, H. M., Calleja, M. Ll., Dragoneas, A., Heins, L., de Angelis, I. H., Poehlker, C., Slagter, H., Vonhof, H., Walter, D., Arns, A. I., Adolphs, N., Auderset, A., Basic, S., Bieler, A., Bruewer, J. D., Chaabane, S., Cheng, Y., Chilinski, M. T., Cybulski, J. D., Disper, T., Duprey, N., Eichele, G., Fiedler, B., Fischer, A., Foreman, A. D., Fuchs, B. M., Galer, S., Harri, J., Jochum, K. P., Jost, A., Jung, J., Kleta, H., Lammel, G., Larink, O., Leibold, P., Martinez-Garcia, A., Moretti, S., Muller, J.-G., Nillius, B., Pan, X., Raj, S. S., Repschlager, J., Rodrigues, E.,Ruff, S. E., Schmitt, M., Schmitter, J. L., Lara, A. S., Silva, P., Smart, S. M., Sorgel, M., Stoll, B., Su, H., Vogt, M., Wald, T., Weber, B., Weber, J., Weis, U., Amann, R., Aristegui, J., Dittmar, T., Gonzalez, M., O’Dea, A., Poschl, U. & Haug, G. H. (2024). Preface: Special Issue on Probing the Open Ocean With the Research Sailing YachtEugen Seiboldfor Climate Geochemistry.Journal of Geophysical Research: Atmospheres, 129(17), e2023JD040581.

Veseli, I., DeMers, M. A., Cooper, Z. S., Schechter, M. S.,Miller, S., Weber, L., Smith, C. B., Rodriguez, L. T., Schroer, W. F., McIlvin, M. R., Lopez, P. Z., Saito, M., Dyhrman, S.,Eren, A. M., Moran, M. A., & Braakman, R. (2024). Digital Microbe: A genome-informed data integration framework for team science on emerging model organisms.Scientific Data,11, 967.

Chimileski, S.,Borisy, G. G., Dewhirst, F. E., &Mark Welch, J. L.(2024). Tip extension and simultaneous multiple fission in a filamentous bacterium.Proceedings of the National Academy of Sciences,121(37), e2408654121.

Matlin, K. S., & Green, S. (2024). Constraint-based reasoning in cell biology: On the explanatory role of context.History and Philosophy of the Life Sciences,46(3), 30.

Attenborough, T.,Rawlinson, K. A., Diaz Soria, C. L., Ambridge, K., Sankaranarayanan, G., Graham, J., Cotton, J. A., Doyle, S. R., Rinaldi, G., & Berriman, M. (2024). A single-cell atlas of the miracidium larva ofSchistosoma mansonireveals cell types, developmental pathways, and tissue architecture.eLife,13, RP95628.

Clarke, D. N.,Kane, A.,Perillo, M., Lowe, C. J., &Swartz, S. Z.(2024). VitelloTag: A tool for high-throughput cargo delivery into oocytes.Development, dev.202857.

Iida, S., Ide, S., Tamura, S., Sasai, M., Tani, T., Goto, T.,Shribak, M., & Maeshima, K. (2024). Orientation-independent-DIC imaging reveals that a transient rise in depletion attraction contributes to mitotic chromosome condensation.Proceedings of the National Academy of Sciences,121(36), e2403153121.

Kwon, H., Hawkins, T., Zaimes, G., Infante, J., Kite-Powell, H., Stekoll, M.,Roberson, L., Zotter, B., Augyte, S., Rocheleau, G., & Sims, N. (2024). Life-cycle analysis of offshore macroalgae production systems in the United States.Algal Research, 82, 103654.

Harry, C. J.,Hibshman, J. D.,Damatac, A.,Davidson, P. L.,Estermann, M. A.,Flores-Flores, M.,Holmes, C. M.,Lázaro, J.,Legere, E.-A.,Leyhr, J.,Thendral, S. B.,Vincent, B. A., &Goldstein, B.(2024). Protocol for fluorescent live-cell staining of tardigrades.STAR Protocols,5(3), 103232.*Authors from Embryology Course*

Holmes, G.,Ferguson, S. R., Lewis, P. A., &Echeverri, K.(2024). LRRK2 kinase activity is necessary for development and regeneration inNematostella vectensis.Neural Development, 19.

Rees, J. M., Kirk, K., Gattoni, G., Hockman, D., Sleight, V. A., Ritter, D. J., Benito-Gutierrez, È., Knapik, E. W., Crump, J. G., Fabian, P., &Gillis, J. A.(2024). A pre-vertebrate endodermal origin of calcitonin-producing neuroendocrine cells.Development,151(20), dev202821.

Bristol, E. M., Behnke, M. I., Spencer, R. G. M., McKenna, A., Jones, B. M., Bull, D. L., &McClelland, J. W.(2024). Eroding Permafrost Coastlines Release Biodegradable Dissolved Organic Carbon to the Arctic Ocean.Journal of Geophysical Research - Biogeosciences, 129(7), e2024JG008233.

Jiang, X., Gallager, S.,Pàmies, R. P.,Ruff, S. E., & Liu, Z. (2024). Laboratory-Simulated Photoirradiation Reveals Strong Resistance of Primary Macroplastics to Weathering.Environmental Science & Technology.

McCoy, D. E., Haig, D., & Kotler, J. (2024). Egg donation and gestational surrogacy: Pregnancy is riskier with an unrelated embryo.Early Human Development,196, 106072.

Min, E., Boelman, N., Gough, L., McLaren, J.,Rastetter, E., Rowe, R., Rocha, A., Turnbull, M., & Griffin, K. (2024). The give and take of Arctic greening: Differential responses of the carbon sink-to-source threshold to light and temperature in tussock tundra may be influenced by vegetation cover.Communications Biology,7, 950.

Shribak, M., &Iourieva, E.(2024). Two Complementary Label-Free Techniques: Orientation-Independent Differential Contrast and Polychromatic Polarization Microscopy.Microscopy and Microanalysis,30(Supplement_1), ozae044.396.

Erickson, J. R.,Walker, S. E.,Arenas Gomez, C. M., &Echeverri, K.(2024).Sall4regulates downstream patterning genes during limb regeneration.Developmental Biology,515, 151–159.

Peña-Montenegro, T., Kleindienst, S., Allen, A.,Eren, A., McCrow, J., Arnold, J., & Joye, S. (2024). Metatranscriptomic response of deep ocean microbial populations to infusions of oil and/or synthetic chemical dispersant.Applied Environmental Microbiology, e0108324.

Comstock, J., Henderson, L. C., Close, H. G., Liu, S., Vergin, K.,Worden, A. Z.,Wittmers, F., Halewood, E., Giovannoni, S., & Carlson, C. A. (2024). Marine particle size-fractionation indicates organic matter is processed by differing microbial communities on depth-specific particles.ISME Communications, ycae090.

Lippmann, K.(2024). A Reduction in the Readily Releasable Vesicle Pool Impairs GABAergic Inhibition in the Hippocampus after Blood–Brain Barrier Dysfunction.International Journal of Molecular Sciences,25(13).

Nowell, R. W.,Rodriguez, F.,Hecox-Lea, B. J.,Mark Welch, D. B.,Arkhipova, I. R., Barraclough, T. G., & Wilson, C. G. (2024). Bdelloid rotifers deploy horizontally acquired biosynthetic genes against a fungal pathogen.Nature Communications,15, 5787.

Schaible, G. A., Jay, Z. J., Cliff, J., Schulz, F., Gauvin, C., Goudeau, D., Malmstrom, R. R.,Ruff, S. E., Edgcomb, V., & Hatzenpichler, R. (2024). Multicellular magnetotactic bacteria are genetically heterogeneous consortia with metabolically differentiated cells.PLOS Biology,22(7), e3002638.

Vargas-Muñiz, J. M.(2024). Adaptive fungal invasion of bat cells.Science,385(6705), 142–143.

Berry, N. E., Cassford, M. S., Agostino, C. J., Dionne, E. N., Schmitt, O. J., Butela, K. A., Jacobs-Sera, D.,DeGiorgis, J. A., & Cornely, K. (2024). Genomic sequences ofMycobacterium smegmatisA cluster phages LBerry, Pembroke, and Zolita.Microbiology Resource Announcements, e00504-24.

Stekoll, M., Pryor, A., Meyer, A., Kite-Powell, H. L., Bailey, D., Barbery, K., Goudey, C. A., Lindell, S.,Roberson, L., & Yarish, C.(2024). Optimizing seaweed biomass production—A two kelp solution.Journal of Applied Phycology.

Treidel, L. A., Deem, K. D., Salcedo, M. K., Dickinson, M. H.,Bruce, H. S., Darveau, C.-A., Dickerson, B. H., Ellers, O., Glass, J. R., Gordon, C. M., Harrison, J. F., Hedrick, T. L., Johnson, M. G., Lebenzon, J. E., Marden, J. H., Niitepõld, K., Sane, S. P., Sponberg, S., Talal, S., Williams, C. M. & Wold, E. S. (2024). Insect Flight: State of the Field and Future Directions.Integrative and Comparative Biology, icae106.

Trouche, B., Schrieke, H., Duron, O.,Eren, A. M., & Reveillaud, J. (2024).Wolbachiapopulations across organs of individualCulex pipiens: Highly conserved intra-individual core pangenome with inter-individual polymorphisms.ISME Communications,4(1), ycae078.

Brock, M. T.,Morrison, H. G.,Maignien, L., & Weinig, C. (2024). Impacts of sample handling and storage conditions on archiving physiologically active soil microbial communities.FEMS Microbiology Letters, fnae044.

Hanlon, R. T.(2024).Octopus cyanea, day octopus. In R. Rosa, I. G. Gleadall, G. J. Pierce, & R. Villanueva (Eds.),Octopus Biology and Ecology(pp. 61–74). Academic Press.

Casiano Rivera, C. V.,Wallace, J. N.,Fisher, G. E., &Morgan, J. R.(2024). Acute introduction of phosphoserine-129 α-synuclein induces severe swelling of mitochondria at lamprey synapses.microPublication Biology.